PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004093.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 283aa    MW: 31502.2 Da    PI: 4.7502
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004093.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.63.4e-12103177176
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkw 76 
                              ++Yn+ A+++GFsvrk k+++  r++++++++f C+k  ++++ +++  ++  t+  t tgC+a+ +  +++  ++ 
  Itr_sc004093.1_g00001.1 103 DMYNDLASRMGFSVRKGKQYYFPRTRNVKSKKFHCYKARFKRKPRSA--NKCYTKIDTWTGCNAMCQFDLDSsGKNV 177
                              58**************************************9999888..8999**************9999844444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-9104175IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGEMLGRSNL ITDIDLNALI VEDYGSLSPV ECNPPTGVES DSLIVCNARS SCFDGDHDDI  60
LDDCNPSAGG GGTSTDANEE DSSIPANQEL VGHSVYLVEE AFDMYNDLAS RMGFSVRKGK  120
QYYFPRTRNV KSKKFHCYKA RFKRKPRSAN KCYTKIDTWT GCNAMCQFDL DSSGKNVSVD  180
QLTYLKDMKR SGVPLSDGIR FLKHQSGGSP FVGFTASDAY NTMLLDSAKH LDETDSNTLI  240
ENFRKRQLNE SGFFFDFKVD DDARLCSFFL EGCANEVGLF VVW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146RFKRKPR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14143211
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-06FAR1-related sequence 7